Haplotype analysis in population–based association studies
Abstract. This paper describes how to use the command hapipf and introduces the
command profhap written for Stata that analyzes population-based
genetic data. For these studies, association can be linkage disequilibrium
within a set of loci or allelic/haplotype association with disease status.
Confidence intervals for odds ratios are calculated with or without
adjustment for possible factors that are confounding the relationship.
Additionally, this command allows the specification of many models of
association that are not widely implemented.
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A. P. Mander
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haplotype analysis, association tests, profile likelihood, odds ratio
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