Using Stata with PHASE and Haploview: Commands for importing and exporting data
J. Charles Huber Jr.
Department of Epidemiology and Biostatistics
Texas A&M Health Science Center School of Rural Public Health
College Station, TX
[email protected]
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Abstract. Modern genetics studies require the use of many specialty software
programs for various aspects of the statistical analysis. PHASE is a program often
used to reconstruct haplotypes from genotype data, and Haploview is a program
often used to visualize and analyze single nucleotide polymorphism data. Three
new commands are described for performing these three steps: 1) exporting genotype
data stored in Stata to PHASE, 2) importing the resulting inferred haplotypes
back into Stata, and 3) exporting the haplotype/single nucleotide polymorphism
data from Stata to Haploview.
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J. Charles Huber Jr.
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phaseout, phasein, haploviewout, genetics, haplotypes, SNPs, PHASE, haploview
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